GPTomics/bioSkills

820 stars · Last commit 2026-05-30

a set of SKILLS.md for doing bioinformatics with agents like claude code

README preview

# bioSkills

A collection of skills that guide AI coding agents (Claude Code, OpenAI Codex, Google Gemini, OpenCode, OpenClaw) through common bioinformatics tasks.

## Project Goal

This repository provides AI agents with expert knowledge for bioinformatics workflows. Each skill contains code patterns, best practices, and examples that help agents generate correct, idiomatic code for common tasks.

Target users range from undergrads learning computational biology to PhD researchers processing large-scale data. The skills cover the full spectrum from basic sequence manipulation to advanced analyses like single-cell RNA-seq and population genetics.

## Performance

Evaluation summary report available at [bioskills_eval_20260328.pdf](resources/bioskills_eval_20260328.pdf). Evaluations were performed on the [Bio-Task Bench](https://github.com/GPTomics/bioTaskBench) dataset. 

![benchmark_performance_20260328](resources/benchmark_performance_20260328.png)

## Requirements

### Python
- Python 3.9+

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